Dr Johanne Murray

Publications

 

2023

• Pai, C. -C., Durley, S. C., Cheng, W. -C., Chiang, N. -Y., Peters, J., Kasparek, T., . . . Humphrey, T. (2023). Homologous recombination suppresses transgenerational DNA end resection and chromosomal instability in fission yeast. Nucleic Acids Research, 51(7), 3205-3222. doi:10.1093/nar/gkad160
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2022

• Hallett, S., Harry, I. C., Schellenberger, P., Zhou, L., Cronin, N. B., Baxter, J., . . . Oliver, A. (2022). Cryo-EM Structure of the Smc5/6 holocomplex. Nucleic Acids Research, 50(16), 9505-9520. doi:10.1093/nar/gkac692
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• Kolesar, P., Stejskal, K., Potesil, D., Murray, J. M., & Palecek, J. J. (2022). Role of Nse1 Subunit of SMC5/6 Complex as a Ubiquitin Ligase. Cells, 11(1). doi:10.3390/cells11010165
  Article. View online.

2021

• Liu, Y., Wang, L., Xu, X., Yuan, Y., Zhang, B., Li, Z., . . . Kong, D. (2021). The intra-S phase checkpoint directly regulates replication elongation to preserve the integrity of stalled replisomes. Proceedings of the National Academy of Sciences (PNAS), 118(24), pages. doi:10.1073/pnas.2019183118
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• Etheridge, T., Caballero, D. V., Campillo-Funollet, E., Herbert, A. D., Irmisch, A., Watson, A., . . . Murray, J. (n.d.). Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association in vivo. eLife, 10, pages. doi:10.7554/eLife.68579
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• Hallett, S., Schellenberger, P., Zhou, L., Beuron, F., Morris, E., Murray, J., & Oliver, A. (2021). Nse5/6 is a negative regulator of the ATPase activity of the Smc5/6 complex. Nucleic Acids Research, 49(8), 4534-4549. doi:10.1093/nar/gkab234
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• Hallett, S., Schellenberger, P., Zhou, L., Beuron, F., Morris, E., Murray, J., & Oliver, A. (2021). Nse5/6 is a negative regulator of the ATPase activity of the Smc5/6 complex. doi:10.1101/2021.02.12.430902
  Preprint. View online.
• Hallett, S., Harry, I. C., Schellenberger, P., Zhou, L., Cronin, N., Baxter, J., . . . Oliver, A. (2021). Cryo-EM structure of the Smc5/6 holo-complex. doi:10.1101/2021.11.25.470006
  Preprint. View online.

2020

• Etheridge, T., Villahermosa, D., Campillo-Funollet, E., Herbert, A., Irmisch, A., Watson, A., . . . Murray, J. (2020). Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association<i>in vivo</i>. doi:10.1101/2020.06.19.148106
  Preprint. View online.

2019

• Dave, A., Pai, C. -C., Durley, S. C., Hulme, L., Sarkar, S., Wee, B. -Y., . . . Humphrey, T. C. (n.d.). Homologous recombination repair intermediates promote efficient de novo telomere addition at DNA double-strand breaks. Nucleic Acids Research, 1-14. doi:10.1093/nar/gkz1109
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2018

• Murray, J., & Carr, A. (n.d.). Integrating DNA damage repair with the cell cycle. Current Opinion in Cell Biology, 52, 120-125. doi:10.1016/j.ceb.2018.03.006
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2017

• Murray, J. (2017). Fission yeast strains with circular chromosomes require the 9-1-1 checkpoint complex for the viability in response to the anti-cancer drug 5-fluorodeoxyuridine. PLoS Medicine, 12(11), 1-16. doi:10.1371/journal.pone.0187775
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• Alt, A., Dang, H. Q., Wells, O., Polo, L. M., Smith, M., McGregor, G. A., . . . Oliver, A. (2017). Specialized interfaces of Smc5/6 control hinge stability and DNA association. Nature Communications, 8, 1-14. doi:10.1038/ncomms14011
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2016

• van der Crabben, S. N., Hennus, M. P., McGregor, G., Ritter, D. I., Nagamani, S. C. S., Wells, O., . . . van Haaften, G. (2016). Destabilized SMC5/6 complex leads to chromosome breakage syndrome with severe lung disease. Journal of Clinical Investigation, 126(8), 2881-2892. doi:10.1172/JCI82890
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• Willis, N. A., Zhou, C., Elia, A. E. H., Murray, J. M., Carr, A. M., Elledge, S. J., & Rhind, N. (2016). Identification of S-phase DNA damage-response targets in fission yeast reveals conservation of damage-response networks. Proceedings of the National Academy of Sciences of the United States of America, 113(26), E3676-E3685. doi:10.1073/pnas.1525620113
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• Hopkins, S. R., McGregor, G. A., Murray, J., Downs, J. A., & Savic, V. (2016). Novel synthetic lethality screening method identifies TIP60-dependent radiation sensitivity in the absence of BAF180. DNA Repair, 46, 47-54. doi:10.1016/j.dnarep.2016.05.030
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol] Molecular genetic tools and techniques in fission yeast. Cold Spring Harbor Protocols, 2016(5), pages. doi:10.1101/pdb.top087601
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol] Extraction of chromosomal DNA from Schizosaccharomyces pombe. Cold Spring Harbor Protocols, 2016(5), pages. doi:10.1101/pdb.prot090985
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol] Colony polymerase chain reaction with Schizosaccharomyces pombe. Cold Spring Harbor Protocols, 2016(5), pages. doi:10.1101/pdb.prot090993
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol] Identifying products of recombinase-mediated cassette exchange (RMCE) in schizosaccharomyces pombe. Cold Spring Harbor Protocols, 2016(5), pages. doi:10.1101/pdb.prot090944
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol]: Transformation of schizosaccharomyces pombe: electroporation procedure. Cold Spring Harbor Protocols, 2016(4), pages. doi:10.1101/pdb.prot090951
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol]Transformation of schizosaccharomyces pombe: lithium acetate/ dimethyl sulfoxide procedure. Cold Spring Harbour Protocols, 2016(4), pages. doi:10.1101/pdb.prot090969
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• Murray, J., Watson, A., & Carr, A. (2016). [Protocol]: Transformation of schizosaccharomyces pombe: protoplast procedure. Cold Spring Harbour Protocols, 2016(4), pages. doi:10.1101/pdb.prot090977
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2015

• Miyabe, I., Mizuno, K., Keszthelyi, A., Daigaku, Y., Skouteri, M., Mohebi, S., . . . Carr, A. (2015). Polymerase d replicates both strands after homologous recombination-dependent fork restart. Nature Structural & Molecular Biology, 22(11), 932-939. doi:10.1038/nsmb.3100
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• Mohebi, S., Mizuno, K., Watson, A., Carr, A., & Murray, J. (2015). Checkpoints are blind to replication restart and recombination intermediates that result in gross chromosomal rearrangements. Nature Communications, 6(1), pages. doi:10.1038/ncomms7357
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2014

• Fontebasso, Y., Etheridge, T. J., Oliver, A. W., Murray, J. M., & Carr, A. M. (2014). Corrigendum to The conserved Fanconi anemia nuclease Fan1 and the SUMO E3 ligase Pli1 act in two novel Pso2-independent pathways of DNA interstrand crosslink repair in yeast [DNA Repair., 12, (December (12)) (2013) 1011-1023]. DNA Repair, 24, 150. doi:10.1016/j.dnarep.2014.11.003
  Article. View online.
• Nanbu, T., Takahashi, K., Murray, J. M., Hirata, N., Ukimori, S., Kanke, M., . . . Ueno, M. (2014). Correction to fission yeast RecQ helicase Rqh1 is required for the maintenance of circular chromosomes [Mol. Cell. Biol. 33, 6, (2013) 1175-1187]. Molecular and Cellular Biology, 34(13), 2548-2550. doi:10.1128/MCB.00505-14
  Article. View online.

2013

• Watson, A., Daigaku, Y., Mohebi, S., Etheridge, T., Chahwan, C., Murray, J., & Carr, A. (2013). Optimisation of the Schizosaccharomyces pombe urg1 expression system. PLoS ONE, 8(12), pages. doi:10.1371/journal.pone.0083800
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• Fontebasso, Y., Etheridge, T., Oliver, A., Murray, J., & Carr, A. (2013). The conserved Fanconi anemia nuclease Fan1 and the SUMO E3 ligase Pli1 act in two novel Pso2-independent pathways of DNA interstrand crosslink repair in yeast. DNA Repair, 12(12), 1011-1023. doi:10.1016/j.dnarep.2013.10.003
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• Nanbu, T., Takahashi, K., Murray, J. M., Hirata, N., Ukimori, S., Kanke, M., . . . Uenoa, M. (2013). Fission yeast RecQ helicase Rqh1 is required for the maintenance of circular chromosomes. Molecular and Cellular Biology, 33(6), 1175-1187. doi:10.1128/MCB.01713-12
  Article. View online.

2012

• Mizuno, K., Miyabe, I., Schalbetter, S. A., Carr, A., & Murray, J. (2013). Recombination-restarted replication makes inverted chromosome fusions at inverted repeats. Nature, 493(7431), 246-249. doi:10.1038/nature11676
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• Tang, Z., Luca, M., Taggart-Murphy, L., Portillo, J., Chang, C., Guven, A., . . . Carr, A. (2012). Interacting factors and cellular localization of SR protein-specific kinase Dsk1. Experimental Cell Research, 318(16), 2071-2084. doi:10.1016/j.yexcr.2012.05.020
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• Hu, J., Sun, L., Shen, F., Chen, Y., Hua, Y., Liu, Y., . . . Kong, D. (2012). The intra-S phase checkpoint targets Dna2 to prevent stalled replication forks from reversing. Cell, 149(6), 1221-1232. doi:10.1016/j.cell.2012.04.030
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• Bass, K. L., Murray, J., & O'Connell, M. J. (2012). Brc1-dependent recovery from replication stress. Journal of Cell Science, 125(11), 2753-2764. doi:10.1242/jcs.103119
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• Murray, J., Stiff, T., & Jeggo, P. (2012). DNA double-strand break repair within heterochromatic regions. Biochemical Society Transactions, 40(1), 173-178. doi:10.1042/BST20110631
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2011

• Taylor, M., Moore, K., Murray, J., Aves, S. J., & Price, C. (2011). Mcm10 interacts with Rad4/Cut5(TopBP1) and its association with origins of DNA replication is dependent on Rad4/Cut5(TopBP1).. DNA Repair, 10(11), 1154-63. doi:10.1016/j.dnarep.2011.09.001
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• Tang, Z., Luca, M., Portillio, J., Ngo, B., Chang, C., Wen, T., . . . Carr, A. (2011). LAMMER kinase Kic1 is involved in pre-mRNA processing. Experimental Cell Research, 317(16), 2308-2320. doi:10.1016/j.yexcr.2011.06.014
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• Vejrup-Hansen, R., Mizuno, K., Miyabe, I., Fleck, O., Holmberg, C., Murray, J., . . . Nielsen, O. (2011). Schizosaccharomyces pombe Mms1 channels repair of perturbed replication into Rhp51 independent homologous recombination.. DNA Repair, 10(3), 283-295.
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2010

• Lambert, S., Mizuno, K., Blaisonneau, J., Martineau, S., Chanet, R., Fréon, K., . . . Baldacci, G. (2010). Homologous recombination restarts blocked replication forks at the expense of genome rearrangements by template exchange. Molecular Cell, 39(3), 346-359. doi:10.1016/j.molcel.2010.07.015
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• Tapia-Alveal, C., Outwin, E., Trempolec, N., Dziadkowiec, D., Murray, J., & O'Connell, M. J. (2010). SMC complexes and topoisomerase II work together so that sister chromatids can work apart. Cell Cycle, 9(11), 2065-2070. doi:10.4161/cc.9.11.11734
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2009

• Mizuno, K., Lambert, S., Baldacci, G., Murray, J., & Carr, A. (2009). Nearby inverted repeats fuse to generate acentric and dicentric palindromic chromosomes by a replication template exchange mechanism. Genes & Development, 23(24), 2876-2886. doi:10.1101/gad.1863009
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• Outwin, E., Irmisch, A., Murray, J., & O'Connell, M. J. (n.d.). Smc5-Smc6-dependent removal of cohesin from mitotic chromosomes. Molecular and Cellular Biology, 29(16), 4363-4375. doi:10.1128/MCB.00377-09
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• Irmisch, A., Ampatzidou, E., Mizuno, K., O'Connell, M. J., & Murray, J. (2009). Smc5/6 maintains stalled replication forks in a recombination-competent conformation. EMBO Journal, 28(2), 144-155. doi:10.1038/emboj.2008.273
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2008

• Murray, J., & Carr, A. (2008). Smc5/6: a link between DNA repair and unidirectional replication?. Nature Reviews Molecular Cell Biology, 9, 177-182. doi:10.1038/nrm2309
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2007

• Lee, K. M., Nizza, S., Hayes, T., Bass, K. L., Irmisch, A., Murray, J., & O'Connell, M. J. (2007). Brc1-mediated rescue of Smc5/6 deficiency; requirement for multiple nucleases and a novel rad18 function. Genetics, 175(4), 1585-95. doi:10.1534/genetics.106.067801
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2006

• Ampatzidou, E., Irmisch, A., O'Connell, M. J., & Murray, J. (2006). Smc5/6 is required for repair at collapsed replication forks.. Molecular and Cellular Biology, 26(24), 9387-9401. doi:10.1128/MCB.01335-06
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2005

• Sheedy, D. M., Dimitrova, D., Rankin, J. K., Bass, K. L., Lee, K. M., Tapia-Alveal, C., . . . O'Connell, M. J. (2005). Brc1-mediated DNA repair and damage tolerance. Genetics, 171(2), 457-468. doi:10.1534/genetics.105.044966
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2003

• Laursen, L. V., Ampatzidou, E., Andersen, A. H., & Murray, J. (2003). Role for the fission yeast RecQ helicase in DNA repair in G2.. Molecular and Cellular Biology, 23(10), 3692-3705. doi:10.1128/MCB.23.10.3692-3705.2003
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• Laursen, L. V., Bjergbaek, L., Murray, J., & Andersen, A. H. (2003). RecQ helicases and topoisomerase III in cancer and aging. Biogerontology, 4(5), 275-87. doi:10.1023/A:1026218513772
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• Jones, R. E., Chapman, J. R., Puligilla, C., Murray, J., Carr, A., Ford, C. C., & Lindsay, H. D. (2003). XRad17 Is Required for the Activation of XChk1 But Not XCds1 during Checkpoint Signaling in Xenopus. Molecular Biology of the Cell, 14(9), 3898-3910. doi:10.1091/mbc.E03-03-0138
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2002

• Nielsen, I. S., Nielsen, O., Murray, J., & Thon, G. (2002). The fission yeast ubiquitin-conjugating enzymes UbcP3, Ubc15, and Rhp6 affect transcriptional silencing of the mating-type region. Eukaryotic Cell, 1, 613-625. doi:10.1128/EC.1.4.613-625.2002
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• Caspari, T., Murray, J., & Carr, A. (2002). Cdc2-cyclin B kinase activity links Crb2 and Rqh1-topoisomerase III. Genes & Development, 16(10), 1195-208. doi:10.1101/gad.221402
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2001

• Verkade, H. M., Teli, T., Laursen, L. V., Murray, J. M., & O'Connell, M. J. (2001). A homologue of the Rad18 postreplication repair gene is required for DNA damage responses throughout the fission yeast cell cycle. Molecular Genetics and Genomics, 265(6), 993-1003. doi:10.1007/s004380100494
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• Van Den Bosch, M., Vreeken, K., Zonneveld, J. B. M., Brandsma, J. A., Lombaerts, M., Murray, J. M., . . . Pastink, A. (2001). Characterization of RAD52 homologs in the fission yeast Schizosaccharomyces pombe. Mutation Research - DNA Repair, 461(4), 311-323. doi:10.1016/S0921-8777(00)00060-4
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2000

• Siboe, G. M., Murray, J., & Kirk, P. M. (2000). Genetic similarity among Cercospora apii-group species and their detection in host plant tissue by PCR/RFLP analyses of the rDNA internal transcribed spacer (ITS). Journal of General and Applied Microbiology, 46(2), 69-78. doi:10.2323/jgam.46.69
  Article. View online.

1999

• Mundt, K. E., Porte, J., Murray, J., Brikos, C., Christensen, P. U., Caspari, T., . . . Carr, A. (1999). The COP9/signalosome complex is conserved in fission yeast and has a role in S phase. Current Biology, 9(23), 1427-1430. doi:10.1016/S0960-9822(00)80091-3
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1998

• Lindsay, H. D., Griffiths, D. J., Edwards, R. J., Christensen, P. U., Murray, J., Osman, F., . . . Carr, A. (1998). S-phase-specific activation of Cds1 kinase defines a subpathway of the checpoint response in Schizosaccharomyces pombe. Genes & Development, 12(3), 382-395.
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1997

• Murray, J., Lindsay, H. D., Munday, C. A., & Carr, A. (1997). Role of Schizosaccharomyces pombe RecQ homolog recombination and checkpoint genes in UV Damage tolerance. Molecular and Cellular Biology, 17(12), 6868-6875.
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• Yonemasu, R., McCready, S. J., Murray, J. M., Osman, F., Takao, M., Yamamoto, K., . . . Yasui, A. (1997). Characterization of the alternative excision repair pathway of UV-damaged DNA in Schizosaccharomyces pombe. Nucleic Acids Research, 25(8), 1553-1558. doi:10.1093/nar/25.8.1553
  Article. View online.

1996

• Muris, D. F. R., Vreeken, K., Carr, A., Murray, J., Smit, C., Lohman, P. H. M., & Pastink, A. (1996). Isolation of the Schizosaccaromyces pombe RAD54 homolog rhp54(+) a gene involved in the repair of radiation-damage and replication fidelity. Journal of Cell Science, 109, 73-81.
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1995

• Lehmann, A., Walicka, M., Griffths, D. J., Murray, J., Watts, F., McCready, S., & Carr, A. (1995). The rad18 Gene of Schizosaccharomyces pombe Defines a New Subgroup of the SMC Superfamily Involved in DNA Repair. Molecular and Cellular Biology, 15(12), 7067-7080.
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1994

• Murray, J., Tavassoli, M., Al-Harithy, R., Sheldrick, K. S., Lehmann, A., Carr, A., & Watts, F. (1994). Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Molecular and Cellular Biology, 14(7), 4878-4888.
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1993

• Carr, A., Sheldrick, K. S., Murray, J., Al-Harithy, R., Watts, F., & Lehmann, A. (1993). Evolutionary conservation of excision repair in Schizosaccharomyces pombe: Evidence for a family of sequences related to the Saccharomyces cerevisiae RAD2 gene. Nucleic Acids Research, 21(6), 1345-1349. doi:10.1093/nar/21.6.1345
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• Doe, C. L., Murray, J., Shayeghi, M., Hoskins, M., Lehmann, A., Carr, A., & Watts, F. (1993). Cloning and characterisation of the Schizosaccharomyces pombe rad8 gene, a member of the SNF2 helicase family. Nucleic Acids Research, 21(25), 5964-5971. doi:10.1093/nar/21.25.5964
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1992

• Murray, J., Doe, C. L., Schenk, P., Carr, A., Lehmann, A., & Watts, F. (1992). Cloning and characterisation of the S.pombe rad15 gene, a homologue to the S.cerevisiae RAD3 and human ERCC2 genes. Nucleic Acids Research, 20(11), 2673-2678.
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1991

• Fenech, M., Carr, A., Murray, J., Watts, F., & Lehmann, A. (1991). Cloning and characterization of the rad4 gene of Schizosaccharomyces pombe; a gene showing short regions of sequence similarity to the human XRCC1 gene. Nucleic Acids Research, 19(24), 6737-6741. doi:10.1093/nar/19.24.6737
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• Lehmann, A., Carr, A., Watts, F., & Murray, J. (1991). DNA repair in the fission yeast, Schizosaccharomyces pombe. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 250(1-2), 205-210. doi:10.1016/0027-5107(91)90177-P
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• Murray, J., Carr, A., Lehmann, A., & Watts, F. (1991). Cloning and characterisation of the rad9 DNA repair gene from Schizosaccharomyces pombe. Nucleic Acids Research, 19(13), 3525-3531. doi:10.1093/nar/19.13.3525
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• Broughton, B. C., Berbet, N., Murray, J., Watts, F., Koken, M. H. M., Lehmann, A., & Carr, A. (1991). Assignment of ten DNA repair genes from Schizosaccharomyces pombe to chromosomal NotI restriction fragments. Molecular and General Genetics MGG, 228(3), 470-472. doi:10.1007/BF00260641
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1990

• Murray, J. M., & Watts, F. Z. (1990). Isolation of a schizosaccharomyces pombe homologue to the rat ribosomal protein, L7. Nucleic Acids Research, 18(15), 4590. doi:10.1093/nar/18.15.4590
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1988

• Grimm, C., Kohli, J., Murray, J., & Maundrell, K. (1988). Genetic engineering of Schizosaccharomyces pombe: A system for gene disruption and replacement using the ura4 gene as a selectable marker. MGG Molecular &amp; General Genetics, 215(1), 81-86. doi:10.1007/BF00331307
  Article. View online.

1983

• Harper, P. S., O'Brien, T., Murray, J. M., Davies, K. E., Pearson, P., & Williamson, R. (1983). The use of linked DNA polymorphisms for genotype prediction in families with Duchenne muscular dystrophy.. Journal of medical genetics, 20(4), 252-254. doi:10.1136/jmg.20.4.252
  Article. View online.
• O'Brien, T., Harper, P. S., Davies, K. E., Murray, J. M., Sarfarazi, M., & Williamson, R. (1983). Absence of genetic heterogeneity in Duchenne muscular dystrophy shown by a linkage study using two cloned DNA sequences.. Journal of medical genetics, 20(4), 249-251. doi:10.1136/jmg.20.4.249
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• Davies, K. E., Pearson, P. L., Harper, P. S., Murray, J. M., O'Brien, T., Sarfarazi, M., & Williamson, R. (1983). Linkage analysis of two cloned DNA sequences flanking the Duchenne muscular dystrophy locus on the short arm of the human X chromosome.. Nucleic acids research, 11(8), 2303-2312. doi:10.1093/nar/11.8.2303
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• Sarfarazi, M., Harper, P. S., Kingston, H. M., Murray, J. M., O'Brien, T., Davies, K. E., . . . Sanger, R. (1983). Genetic linkage relationship between the Xg blood group system and two X chromosome DNA polymorphisms in families with Duchenne and Becker muscular dystrophy.. Human genetics, 65(2), 169-171. doi:10.1007/bf00286656
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1982

• Murray, J. M., Davies, K. E., Harper, P. S., Meredith, L., Mueller, C. R., & Williamson, R. (1982). Linkage relationship of a cloned DNA sequence on the short arm of the X chromosome to Duchenne muscular dystrophy.. Nature, 300(5887), 69-71. doi:10.1038/300069a0
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