Penn Lab

Resources

 

LAB PICTURES

Slice patch clamp setup 1
upright microscope; dual patch clamp setup

Slice patch clamp setup 2
upright microscope; patch clamp and piezo-driven solution exchange setup

 

 

 

 

 

 

 

 

Slice patch clamp setup 3
upright microscope; dual patch clamp setup

 

 

 

 

 

 

 

 


Inverted patch clamp setup
inverted microscope; patch clamp and piezo-driven solution exchange setup

 

 

 

 

The super computer
Simulations and analysis

 

 

 

 


SOFTWARE

Peaker
Penn Lab Python 2.7 Modules for Electrophysiology Data Analysis

Available at Mathworks Matlab Central File Exchange:
https://uk.mathworks.com/matlabcentral/fileexchange/61567-peaker-analysis-toolbox

Or at GitHub:
https://github.com/acp29/Peaker


Penn
Our Python 2.7 modules for electrophysiology data acquisition (with ACQ4) or analysis (with Stimfit).

Available at GitHub:
https://github.com/acp29/penn


SNPMAP

Python code for SNP annotation for proteins on interest using NCBI database files

Available at GitHub:
https://github.com/acp29/SNPMAP

 

multicmp
A function that adjusts p-values to control the Type 1 error rate during multiple comparisons.
https://uk.mathworks.com/matlabcentral/fileexchange/61659-multicmp



ibootci
Computes calibrated percentile confidence intervals by iterated bootstrap.
https://uk.mathworks.com/matlabcentral/fileexchange/52741-ibootci



wanova
Performs Welch's alternative to one-way analysis of variance (ANOVA).
https://uk.mathworks.com/matlabcentral/fileexchange/61661-wanova



epsilon
Corrects for violations of sphericity in repeated-measures ANOVA designs.
https://uk.mathworks.com/matlabcentral/fileexchange/61660-epsilon



smoothmedian
Computes a smoothed version of the median.
https://uk.mathworks.com/matlabcentral/fileexchange/52737-smoothmedian-x-dim-tol-



pseudomedian
Computes the Hodges-Lehmann estimator (pseudo-median).
https://uk.mathworks.com/matlabcentral/fileexchange/53005-pseudomedian